Introduction the Principle of Saturation Additionality for Enzymatic Process into the Methodology of Plants Raw Materials Complete Processing
https://doi.org/10.36107/spfp.2022.365
Abstract
Background: Biotechnological approach to complete processing of plant raw materials using enzyme preparations allows the efficient use of its native biological and/or technological potential. The point components are fragments of molecular components of the cell wall matrix with a target glycoside bonds' hard-to-find concentration which is necessary to determine the enzyme kinetic characteristics.
Materials and methods: Non-granulated dry non-molassed sugar beet pulp as well as lyase and hydrolase enzymes were used as research objects Purpose: to study an approach based on approximation of experimental data followed by determination of horizontal asymptotes.
Results: The adequacy of using an indirect indicators, such as specific electrical conductivity, for assessing the kinetic parameters of lyase and hydrolase enzymes is substantiated. An array of experimental data was obtained for dynamics of specific electrical conductivity during processing beet pulp with enzyme preparations in the concentration range from 0 to 0.8%. As a result of the approximation, the local limits of the substrate concentration were calculated in indirect units. For dynamic of the "substrate - enzyme" system, a set of postulates was proposed. On the basis of this set, the principle of saturating complementarity for enzymatic process is formed. In according with it the local substrate concentration limit achieved at a given enzyme concentration is a fractional part of some global one, which can be completely converted into a product through several stages where the local limit of the duration of each stage tends to infinity. It has been experimentally established that, in the case of lyase and hydrolase enzyme, the calculated local substrate concentration limits increase monotonously with an increase of enzyme concentration, degenerating into a horizontal asymptote corresponding to the global substrate concentration limit, which confirms both the principle of saturating complementarity and its consequences. The applicability of low enzyme concentrations (within 0.1-0.2%) and several step-by-step stages for the enzymatic transformation of a substrate into a product has been experimentally established.
Conclusion: As a result of research, the principle of saturating complementarity for enzymatic process was developed. Based on experimental data on the enzymatic transformation dynamics for processed object, it allows an unambiguous determination of the effective substrate concentration in the absence of certainty about its quantity value, or the impossibility of direct determination. The resulting value can be used to establish the kinetic characteristics of enzymatic process, such as Vmax and Km. The principle of saturating complementarity is applicable for lyase and hydrolase homoenzymes. It is a one of the necessary components within the decision tree for development the technologies for industrial production of plant polyglycans.
About the Authors
Andrey N. PetrovRussian Federation
Tatyana Yu. Kondratenko
Russian Federation
References
1. Boltovsky, V.S. (2021). Enzymatic hydrolysis of plant raw materials: state and prospects. Vestsi Natsyyanal’naiakademii navuk Belarusi. Seryya khimichnykh navuk = Proceedings of the National Academy of Sciences of Belarus, ChemicalSeries, 57(4):502-512 (in Russian). https://doi.org/10.29235/1561-8331-2021-57-4-502-512
2. Hennessey-Ramos, L., Murillo-Arango, W., Vasco-Correa, J., & Paz Astudillo, I.C. (2021). Enzymatic Extraction and Characterization of Pectin from Cocoa Pod Husks (Theobroma cacao L.) Using Celluclast® 1.5 L. Molecules, 9;26(5):1473. https://doi.org/10.3390%2Fmolecules26051473
3. Hassan, M.L., Berglund, L., Abou Elseoud, W.S. et al. (2021). Effect of pectin extraction method on properties of cellulose nanofibers isolated from sugar beet pulp. Cellulose, 28:10905–-10920. https://doi.org/10.1007/s10570-021-04223-9
4. Marjamaa, K., & Kruus, K. (2018). Enzyme biotechnology in degradation and modification of plant cell wall polymers. Physiol Plant, 164(1):106-118. https://doi.org/10.1111/ppl.12800
5. Barron, C., Devaux, M.F., Foucat, L. et al. (2021). Enzymatic degradation of maize shoots: monitoring of chemical and physical changes reveals different saccharification behaviors. Biotechnol Biofuels, 14:1. https://doi.org/10.1186/s13068-020-01854-1
6. Vitol, I.S., Igoryanova, N.A., & Meleshkina, E.P. (2019). Bioconversion of secondary products of processing of grain cereals crops. Food systems, 2(4):18-24. https://doi.org/10.21323/2618-9771-2019-2-4-18-24
7. Punekar, N.S. (2018). Henri-Michaelis-Menten Equation. In: ENZYMES: Catalysis, Kinetics and Mechanisms. Springer, Singapore. pp.155-176. https://doi.org/10.1007/978-981-13-0785-0_15
8. McDonald, A.G., & Tipton, K.F. (2022). Parameter Reliability and Understanding Enzyme Function. Molecules, 27(1):263. https://doi.org/10.3390/molecules27010263
9. Srinivasan, B. (2021), A guide to the Michaelis-Menten equation: steady state and beyond. FEBS J. https://doi.org/10.1111/febs.16124
10. Choi, B, Rempala, G.A., & Kim, J.K. (2017). Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters. Sci Rep., 7(1):17018. https://doi.org/10.1038%2Fs41598-017-17072-z
11. Andersen, M., Kari, J., Borch, K., & Westh, P. (2018). Michaelis-Menten equation for degradation of insoluble substrate. Mathematical Biosciences, 296:93-97. https://doi.org/10.1016/j.mbs.2017.11.011
12. Saganuwan, S.A. (2021). Application of modified Michaelis-Menten equations for determination of enzyme inducing and inhibiting drugs. BMC Pharmacol Toxicol 22:57. https://doi.org/10.1186/s40360-021-00521-x
13. Schnell, S. (2014), Validity of the Michaelis-Menten equation – steady-state or reactant stationary assumption: that is the question. FEBS J, 281: 464-472. https://doi.org/10.1111/febs.12564
14. Zhang, B., Gao, Y., Zhang, L., & Zhou, Y. (2021). The plant cell wall: Biosynthesis, construction, and functions. J. Integr. Plant Biol., 63:251-272. https://doi.org/10.1111/jipb.13055
15. Houston, K., Tucker, M.R., Chowdhury, J., Shirley, N., & Little, A. (2016). The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions. Front. Plant Sci., 7:984. https://doi.org/10.3389/fpls.2016.00984
16. Yilmaz, N., Kodama, Y., & Numata, K. (2020). Revealing the Architecture of the Cell Wall in Living Plant Cells by Bioimaging and Enzymatic Degradation. Biomacromolecules, 21:95-103. https://doi.org/10.1021/acs.biomac.9b00979
17. Rytioja, J., Hildén, K., Yuzon, J., Hatakka, A., de Vries, R.P., & Mäkelä, M.R. (2014). Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes. Microbiology and Molecular Biology Reviews, 78(4):614-649. https://doi.org/10.1128/MMBR.00035-14
18. Zhao, Y., Man, Y., Wen, J., Guo, Y., & Lin, J. (2019). Advances in Imaging Plant Cell Walls. Trends in Plant Science, 24(19):867-878. https://doi.org/10.1016/j.tplants.2019.05.009
19. Holland, C., Ryden, P., Edwards, C.H., & Grundy, M.M.-L. (2020). Plant Cell Walls: Impact on Nutrient Bioaccessibility and Digestibility. Foods, 9:201. https://doi.org/10.3390/foods9020201
20. Carpita, N.C., & Mccann, M.C. (2020). Redesigning plant cell walls for the biomass-based bioeconomy. Journal of Biological Chemistry, 295(44):15144–15157. https://doi.org/10.1074/jbc.REV120.014561.
21. Sista Kameshwar, A.K., & Qin, W. (2018). Structural and functional properties of pectin and lignin-carbohydrate complexes de-esterases: a review. Bioresour. Bioprocess., 5:43. https://doi.org/10.1186/s40643-018-0230-8
22. Phyo, P., Gu, Y., & Hong, M. (2019). Impact of acidic pH on plant cell wall polysaccharide structure and dynamics: insights into the mechanism of acid growth in plants from solid-state NMR. Cellulose, 26:291-304. https://doi.org/10.1007/s10570-018-2094-7
23. Haas, K.T., Wightman, R., Peaucelle, A., & Höfte, H. (2021). The role of pectin phase separation in plant cell wall assembly and growth. The Cell Surface, 7:100054. https://doi.org/10.1016/j.tcsw.2021.100054
24. Shin, Y., Chane, A., Jung, M., & Lee, Y. (2021). Recent Advances in Understanding the Roles of Pectin as an Active Participant in Plant Signaling Networks. Plants., 10(8):1712. https://doi.org/10.3390/plants10081712
25. He, Q., Yang, J., Zabotina, O.A., & Yu, C. (2021). Surface-enhanced Raman spectroscopic chemical imaging reveals distribution of pectin and its co-localization with xyloglucan inside onion epidermal cell wall. PLoS ONE 16(5):e0250650. https://doi.org/10.1371/journal.pone.0250650
26. Szerement, J., & Szatanik-Kloc, A. (2022). Cell-wall pectins in the roots of Apiaceae plants: adaptations to Cd stress. Acta Physiol Plant, 44:53. https://doi.org/10.1007/s11738-022-03386-7
27. Benz J.Ph., Chau B.H., Zheng D., Bauer S., Glass N.L., & Somerville Ch.R. (2014). A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations. Molecular Microbiology, 91(2):275-299. https://doi.org/10.1111/mmi.12459
28. Seltman, Y.J. (2018). Experimental Design and Analysis. Pittsburgh: Carnegie Mellon University. 414 p. https://www.stat.cmu.edu/~hseltman/309/Book/Book.pdf.
29. Kondratenko, V.V., Kondratenko, T.Yu., Petrov, A.N., & Belozerov, G.A.. (2020). Assessing protopectin transformation potential of plant tissue using a zoned criterion space. Foods and Raw Materials, 8(2):348-361. http://doi.org/10.21603/2308-4057-2020-2-348-361.
30. Kondratenko, V.V., Kondratenko, T.Yu., & Petrov, A.N. (2021). Directed homoenzymatic fragmentation of the plant protopectin complex: Assessment criteria. Foods and Raw Materials, 9(2):254-261. https://doi.org/10.21603/2308-4057-2021-2-254-261.
Review
For citations:
Petrov A.N., Kondratenko T.Yu. Introduction the Principle of Saturation Additionality for Enzymatic Process into the Methodology of Plants Raw Materials Complete Processing. Storage and Processing of Farm Products. 2022;(3). (In Russ.) https://doi.org/10.36107/spfp.2022.365